Report for Sequence Feature Glyma08g19250
Feature Type: gene_model
Chromosome: Gm08
Start: 14532462
stop: 14538613
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g19250
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G13810 AT
Annotation by Michelle Graham. TAIR10: AGD2-like defense response protein 1 | chr2:5768489-5772138 FORWARD LENGTH=456
SoyBase E_val: 0 ISS
GO:0009058 GO-bp
Annotation by Michelle Graham. GO Biological Process: biosynthetic process
SoyBase N/A ISS
GO:0009089 GO-bp
Annotation by Michelle Graham. GO Biological Process: lysine biosynthetic process via diaminopimelate
SoyBase N/A ISS
GO:0009693 GO-bp
Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process
SoyBase N/A ISS
GO:0009862 GO-bp
Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway
SoyBase N/A ISS
GO:0010150 GO-bp
Annotation by Michelle Graham. GO Biological Process: leaf senescence
SoyBase N/A ISS
GO:0042742 GO-bp
Annotation by Michelle Graham. GO Biological Process: defense response to bacterium
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0003824 GO-mf
Annotation by Michelle Graham. GO Molecular Function: catalytic activity
SoyBase N/A ISS
GO:0008483 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transaminase activity
SoyBase N/A ISS
GO:0010285 GO-mf
Annotation by Michelle Graham. GO Molecular Function: L,L-diaminopimelate aminotransferase activity
SoyBase N/A ISS
GO:0016740 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transferase activity
SoyBase N/A ISS
GO:0030170 GO-mf
Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding
SoyBase N/A ISS
KOG0257
KOG
Kynurenine aminotransferase, glutamine transaminase K
JGI ISS
PTHR11751 Panther
SUBGROUP I AMINOTRANSFERASE RELATED
JGI ISS
PTHR11751:SF22 Panther
AMINOTRANSFERASE
JGI ISS
PF00155 PFAM
Aminotransferase class I and II
JGI ISS
UniRef100_G7INS4 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: LL-diaminopimelate aminotransferase n=1 Tax=Medicago truncatula RepID=G7INS4_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1KUE8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KUE8_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g19250
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma08g19250
Paralog Evidence Comments
Glyma15g05750 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g19250 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g180600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g19250
Coding sequences of Glyma08g19250
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g19250.1 sequence type=CDS gene model=Glyma08g19250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTACAACTCATCAATTTGCAGTTTTATGTTTAGTACTAATATTTTGCAGCCTAGGATGGTAATTGCGAGGCTGTCATGCACATTGAAGACTCATCAAAACGTGAGAATCGGACACTGCACAAAGGTGCCCAGGAATGTAAACATGGAGAAACTGCAACATGGTTATTTATTTCCTGAGATTGAAAGACACGAGCTTATGCACTTAGAGATGTATCCACATGCAAATGTAATAGACCTCGGAATTGGTGATACGACACAACCCTTACCAACAATTGTAACATCTAGCATGGTTGATTTTGTGCATGGCCTTTCAACAGCAACAGGCTATAAAGGATATGGACCAGAGCAAGGTGAAAAGGCCTTGAGGAAAGCAATTTCTGTTACATTCTACAAAGATCTGGGGATAAAACCTTCTGAGGTTTTTGTTTCAGATGGTGCACAGTGTGATATTACTCGTCTTCAGCTGCTTATGGGTCCCAATCTGAAGATAGCTGTGCAGGATCCATCCTTTCCGGCCTACATAGATTCGAGTGTCATAATTGGTCAGGCTGGCAAGTTTGTAGATAAAGCTGGGAAGTACAAAAACATAGAATACATGACATGTGGACCTCAAAGTGACTTCTTTCCTGATCTTCCTACCATTTCAAGGACTGAACTTATTTTCTTCAATTCTCCAAACAATCCCACTGGTCATGCAGCAACAAGGAAGCAATTAGAACAACTTGTGGATTTTGCCAAAGTGAATGGATCAATCATTATCTTTGACTCTGCATATTCAGCATATATCACTGATGATAGTCCTAAATCAATCTACGAAATTCCTGGAGCCAGAGAGGTTGCAATTGAAGTGTCATCCTTCTCGAAATTTGCTGGCTTCACAGGTGTCCGCCTTGGTTGGACAGTGGTCCCTGAAGAACTCTTGTATTCAAATGGCTTTCCTGTTGTGCATGATTTCAACCGTATAATGTGCACATGTTTTAATGGAGCATCCAACATAGCTCAAGCTGGTGGACTAGCATGCCTTTCCCCAGAGGGTTTAAGGGCCATGCAGACCCTTGTTGACTACTATATGGAGAATGCAAGGATACTGGTTGATGCTTTGACTTCTCTTGGTCTGACAGTGTATGGTGGTAAAAATGCACCCTATGTTTGGGTCCATTTTCCTGGCTCAAAATCTTGGAATGTTTTTGCTGAAATTCTTGAGAAGACTCACATAATTACAGTCCCGGGTAGTGGTTTTGGACCAGGTGGTGAAGAATATATAAGAATTAGTGCTTTTGGCCAGAGAGATTCCATCATTGAAGCCTCAAAAAGACTCAAATACCTTATCTATCAGGAGCAAAACTAA
Predicted protein sequences of Glyma08g19250
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g19250.1 sequence type=predicted peptide gene model=Glyma08g19250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MYNSSICSFMFSTNILQPRMVIARLSCTLKTHQNVRIGHCTKVPRNVNMEKLQHGYLFPEIERHELMHLEMYPHANVIDLGIGDTTQPLPTIVTSSMVDFVHGLSTATGYKGYGPEQGEKALRKAISVTFYKDLGIKPSEVFVSDGAQCDITRLQLLMGPNLKIAVQDPSFPAYIDSSVIIGQAGKFVDKAGKYKNIEYMTCGPQSDFFPDLPTISRTELIFFNSPNNPTGHAATRKQLEQLVDFAKVNGSIIIFDSAYSAYITDDSPKSIYEIPGAREVAIEVSSFSKFAGFTGVRLGWTVVPEELLYSNGFPVVHDFNRIMCTCFNGASNIAQAGGLACLSPEGLRAMQTLVDYYMENARILVDALTSLGLTVYGGKNAPYVWVHFPGSKSWNVFAEILEKTHIITVPGSGFGPGGEEYIRISAFGQRDSIIEASKRLKYLIYQEQN*